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Neuroimagen computacional

Líneas de investigación

Desarrollo y aplicación de métodos para medir conectividad cerebral a partir de Neuroimagen.

Desarrollo y aplicación de métodos machine learning combinando datos multimodales con utilidad en investigación clínica.

Análisis y explotación de Grafos a partir de Neuroimagen Multimodal.

Actividades del grupo

El Grupo de Neuroimagen Computacional es un grupo altamente metodológico que combina conectividad cerebral y machine learning en investigación clínica. Formado por profesionales con diferente especialización, combinamos Ingeniería, Matemáticas, Física, Biología y Medicina para entender el cerebro. En concreto, nuestro paradigma fundamental es la conectividad cerebral tanto a nivel estructural como funcional, o cómo ciertas funciones cognitivas como por ejemplo la atención o la memoria están representadas en determinadas redes cerebrales, o cómo ciertas patologías como las neurodegenerativas o la epilepsia desconectan o alteran a determinadas redes específicas.

Más información en la web.

Foto grupo

Coordinador/a del grupo



Miembros del grupo

  Beatriz Mateos Goñi
 
 
  Alberto Cabrera Zubizarreta
 
 
  Iñaki Escudero Martínez
 
 
  Paolo Bonifazi
 
  |   844651 - 946182627
  Antonio Jiménez Marín
 
 
  Borja Camino Pontes
 
 
  Endika Martínez Gutíerrez
 
 
  Jorge García Condado
 
 
  Izaro Fernández Iriondo
 
 
  Asier Erramuzpe Aliaga
 
 
  Mayya Sundukova
 
 
  Lucía Prado Pérez
 
 
  Iñigo Tellaetxe Elorriaga
 
 

Publicaciones del grupo

Monette S, Bertrand JA, Perreau Linck E, Ramos Usuga D, Rivera D, Arango Lasprilla JC. The profession of neuropsychologist in Canada: Findings of a national survey. Clin Neuropsychol. 2023; 37(1): 1-33. DOI:10.1080/13854046.2021.2002934.

Perrin PB, Ramos Usuga D, West SJ, Merced K, Klyce DW, Lequerica AH, et al. Network Analysis of Neurobehavioral Symptom Patterns in an International Sample of Spanish-Speakers with a History of COVID-19 and Controls. Int J Environ Res Public Health. 2023; 20(1). DOI:10.3390/ijerph20010183.

Camino Pontes B, Gonzalez Lopez F, Santamaria Gomez G, Sutil Jimenez AJ, Sastre Barrios C, de Pierola IF, et al. One-year prediction of cognitive decline following cognitive-stimulation from real-world data. J Neuropsychol. 2023; 17(2): 302-318. DOI:10.1111/jnp.12307.

Martin Suarez S, Cortes JM, Bonifazi P. Blockage of STAT3 during epileptogenesis prevents GABAergic loss and imprinting of the epileptic state. Brain. 2023; 146(8): 3416-3430. DOI:10.1093/brain/awad055.

Di Giusto ML, Ertl MM, Ramos Usuga D, Carballea D, Degano M, Perrin PB, et al. Sexual Health and Sexual Quality of Life Among Individuals With Spinal Cord Injury in Latin America. Topics In Spinal Cord Injury Rehabilitation. 2023; 29(1): 54-69. DOI:10.46292/sci21-00080.

Sampedro A, Ibarretxe Bilbao N, Pena J, Cabrera Zubizarreta A, Sanchez P, Gomez Gastiasoro A, et al. Analyzing structural and functional brain changes related to an integrative cognitive remediation program for schizophrenia: A randomized controlled trial. Schizophr Res. 2023; 255: 82-92. DOI:10.1016/j.schres.2023.03.021.

Diaz Ramon JL, Gardeazabal J, Izu RM, Garrote E, Rasero J, Apraiz A, et al. Melanoma Clinical Decision Support System: An Artificial Intelligence-Based Tool to Diagnose and Predict Disease Outcome in Early-Stage Melanoma Patients. Cancers. 2023; 15(7). DOI:10.3390/cancers15072174.

Liozidou A, Varela V, Vlastos DD, Giogkaraki E, Alzueta E, Perrin PB, et al. Forced social isolation and lockdown during the COVID-19 pandemic: depression, anxiety, trauma-distress and coping mechanisms of a Greek sample. J Public Health-Heidelberg. 2023. DOI:10.1007/s10389-023-01907-3.

Rasero J, Jimenez Marin A, Diez I, Toro R, Hasan MT, Cortes JM. The Neurogenetics of Functional Connectivity Alterations in Autism: Insights From Subtyping in 657 Individuals. Biol Psychiatry. 2023; 94(10): 804-813. DOI:10.1016/j.biopsych.2023.04.014.

Labayru G, Camino B, Jimenez Marin A, Garmendia J, Villanua J, Zulaica M, et al. White matter integrity changes and neurocognitive functioning in adult-late onset DM1: a follow-up DTI study. Sci Rep. 2022; 12(1): 3988-3988. DOI:10.1038/s41598-022-07820-1.

Garcia M, Rouco Axpe I, Amayra I, Rodriguez Antiguedad A, Catalli C, Cabrera Zubizarreta A, et al. Neuropsychological Profile of Hereditary Ataxias: Study of 38 Patients. Arch Clin Neuropsychol. 2022; 37(5): 904-915. DOI:10.1093/arclin/acac024.

Iniguez M, Jimenez Marin A, Erramuzpe A, Acera M, Tijero B, Murueta Goyena A, et al. Heart-brain synchronization breakdown in Parkinson's disease. npj Parkinsons Dis. 2022; 8(1): 64-64. DOI:10.1038/s41531-022-00323-w.

Fernandez Iriondo I, Jimenez Marin A, Sierra B, Aginako N, Bonifazi P, Cortes JM. Brain Mapping of Behavioral Domains Using Multi-Scale Networks and Canonical Correlation Analysis. Front Neurosci. 2022; 16. DOI:10.3389/fnins.2022.889725.

Sorzano C, Vilas JL, Ramirez Aportela E, Krieger J, del Hoyo D, Herreros D, et al. Image processing tools for the validation of CryoEM maps. Faraday Discuss. 2022; 240(0): 210-227. DOI:10.1039/d2fd00059h.

Gatica M, E Rosas F, A M Mediano P, Diez I, P Swinnen S, Orio P, et al. High-order functional redundancy in ageing explained via alterations in the connectome in a whole-brain model. PLoS Comput Biol. 2022; 18(9): 1010431-1010431. DOI:10.1371/journal.pcbi.1010431.

Nunez Fernandez S, Rivera D, Maria Arroyo Anllo E, Ortiz Jimenez XA, Camino Pontes B, Salinas Martinez R, et al. Validation of the Norma Latina Neuropsychological Assessment Battery in Patients with Alzheimer's Disease in Mexico. Int J Environ Res Public Health. 2022; 19(18). DOI:10.3390/ijerph191811322.

Ramos Usuga D, Perrin PB, Bogdanova Y, Olabarrieta Landa L, Alzueta E, Baker FC, et al. Moderate, Little, or No Improvements in Neurobehavioral Symptoms among Individuals with Long COVID: A 34-Country Retrospective Study. Int J Environ Res Public Health. 2022; 19(19). DOI:10.3390/ijerph191912593.

Reyero P, Erramuzpe A, Murueta Goyena A, Jimenez Marin A, Acera M, Teijeira Portas S, et al. Amygdala-hippocampus damage critically contributes to visual dysfunction in Parkinson's disease. Mov Disord. 2022; 37: 91-92

Garcia Condado J, Munoz Barrutia A, Sorzano COS. Automatic determination of the handedness of single-particle maps of macromolecules solved by CryoEM. J Struct Biol. 2022; 214(4): 107915-107915. DOI:10.1016/j.jsb.2022.107915.

Diez Cirarda M, Cabrera Zubizarreta A, Murueta Goyena A, Strafella AP, Del Pino R, Acera M, et al. Multimodal visual system analysis as a biomarker of visual hallucinations in Parkinson's disease. J Neurol. 2023; 270(1): 519-529. DOI:10.1007/s00415-022-11427-x.

Iniguez M, Jimenez Marin A, Erramuzpe A, Acera M, Tijero B, Murueta Goyena A, et al. Heart-brain synchronization breakdown in Parkinson's disease. Mov Disord. 2022; 37: 627-628

Diez Cirarda M, Cabrera A, Murueta Goyena A, Strafella A, Del Pino R, Acera MA, et al. Visual system abnormalities and visual hallucinations in Parkinson's disease. Mov Disord. 2022; 37: 623-623

Chiappalone M, Cota VR, Care M, Di Florio M, Beaubois R, Buccelli S, et al. Neuromorphic-Based Neuroprostheses for Brain Rewiring: State-of-the-Art and Perspectives in Neuroengineering. Brain Sci. 2022; 12(11). DOI:10.3390/brainsci12111578.

Sorzano C, Vilas JL, Ramirez Aportela E, Krieger J, del Hoyo D, Herreros D, et al. Image processing tools for the validation of CryoEM maps (vol 240, pg 210, 2022). Faraday Discuss. 2022; 240(0): 228-228. DOI:10.1039/D2FD90074B.

Olabarrieta Landa L, Ramos Usuga D, Benito Sanchez I, Gonzalez I, Lopez Hernandez K, Logatt Grabner CY, et al. School professionals' knowledge about pediatric traumatic brain injury: an international study. Brain Inj. 2022. DOI:10.1080/02699052.2022.2145364.

Jimenez Marin A, De Bruyn N, Gooijers J, Llera A, Meyer S, Alaerts K, et al. Multimodal and multidomain lesion network mapping enhances prediction of sensorimotor behavior in stroke patients. Sci Rep. 2022; 12(1): 22400-22400. DOI:10.1038/s41598-022-26945-x.

Diez Cirarda M, Cabrera Zubizarreta A, Murueta Goyena A, Strafella AP, Del Pino R, Acera M, et al. Multimodal visual system analysis as a biomarker of visual hallucinations in Parkinson's disease (Nov, 10.1007/s00415-022-11427-x, 2022). J Neurol. 2023; 270(1): 530-530. DOI:10.1007/s00415-022-11492-2.

Martinez Gutierrez E, Jimenez Marin A, Stramaglia S, Cortes JM. The structure of anticorrelated networks in the human brain. Frontiers In Network Physiology. 2022; 2: 946380-946380. DOI:10.3389/fnetp.2022.946380.

Torices L, de las Heras J, Arango Lasprilla JC, Cortes JM, Nunes Xavier CE, Pulido R. MMADHC premature termination codons in the pathogenesis of cobalamin D disorder: Potential of translational readthrough reconstitution. Molec Genet Metab Rep. 2021; 26: 100710-100710. DOI:10.1016/j.ymgmr.2021.100710.

Luna S, Torices L, Mingo J, Amo L, Rodriguez Escudero I, Ruiz Ibarlucea P et al. A global analysis of the reconstitution of PTEN function by translational readthrough of PTEN pathogenic premature termination codons. Hum Mutat. 2021; 42(5): 551-566. DOI:10.1002/humu.24186.

Martin Noguerol T, Concepcion Aramendia L, Lim CCT, Santos Armentia E, Cabrera Zubizarreta A, Luna A. Conventional and advanced MRI evaluation of brain vascular malformations. J Neuroimaging. 2021; 31(3): 428-445. DOI:10.1111/jon.12853.

Gatica M, Cofre R, Mediano PM, Rosas F, Orio P, Diez I et al. High-order interdependencies in the aging brain. Brain Connect. 2021; 11(9): 734-744. DOI:10.1089/brain.2020.0982.

Axpe IR, Goni BM, Duenas LZ, Idiondo E. Diagnostic difficulty of a glioblastoma with an unusual presentation. Neurologia. 2021; 36(3): 241-243. DOI:10.1016/j.nrl.2020.04.016.

Jimenez Marin A, Diez I, Labayru G, Sistiaga A, Caballero MC, Andres Benito P et al. Transcriptional signatures of synaptic vesicle genes define myotonic dystrophy type I neurodegeneration. Neuropathol Appl Neurobiol. 2021; 47(7): 1092-1108. DOI:10.1111/nan.12725.

He CC, Cortes JM, Kang XD, Cao J, Chen H, Guo XN et al. Individual-based morphological brain network organization and its association with autistic symptoms in young children with autism spectrum disorder. Hum Brain Mapp. 2021; 42(10): 3282-3294. DOI:10.1002/hbm.25434.

Nunez Rivero M, Camino B, Diez I, Erramuzpe A, Martinez Gutierrez E, Stramaglia S et al. A controlled thermoalgesic stimulation device for exploring novel pain perception biomarkers. IEEE J Biomed Health Inform. 2021; PP(8): 2948-2957. DOI:10.1109/JBHI.2021.3080935.

Murueta Goyena A, Barrenechea M, Erramuzpe A, Teijeira Portas S, Pengo M, Ayala U et al. Foveal Remodeling of Retinal Microvasculature in Parkinson's Disease. Front Neurosci. 2021; 15: 708700-708700. DOI:10.3389/fnins.2021.708700.

Martin Noguerol T, Mohan S, Santos Armentia E, Cabrera Zubizarreta A, Luna A. Advanced MRI assessment of non-enhancing peritumoral signal abnormality in brain lesions. Eur J Radiol. 2021; 143: 109900-109900. DOI:10.1016/j.ejrad.2021.109900.

del Pino R, Acera M, Murueta Goyena A, Lucas Jimenez O, Ojeda N, Ibarretxe Bilbao N et al. Visual dysfunction is associated with cognitive impairment in Parkinson's disease. Parkinsonism Relat Disord. 2021; 92: 22-25. DOI:10.1016/j.parkreldis.2021.10.005.

Torres JJ, Munoz MA, Cortes JM, Mejias JF. Special Issue on Emergent Effects in Stochastic Neural Networks with Application to Learning and Information Processing. Neurocomputing. 2021; 461: 632-634. DOI:10.1016/j.neucom.2021.02.097.

Fernandez Iriondo I, Jimenez Marin A, Diez I, Bonifazi P, Swinnen SP, Munoz MA et al. Small variation in dynamic functional connectivity in cerebellar networks. Neurocomputing. 2021; 461: 751-761. DOI:10.1016/j.neucom.2020.09.092.

Safari A, Moretti P, Diez I, Cortes JM, Munoz MA. Persistence of hierarchical network organization and emergent topologies in models of functional connectivity. Neurocomputing. 2021; 461: 743-750. DOI:10.1016/j.neucom.2021.02.096.

Diez Cirarda M, Gabilondo I, Ibarretxe Bilbao N, Gomez Esteban JC, Kim J, Lucas Jimenez O et al. Contributions of sex, depression, and cognition on brain connectivity dynamics in Parkinson's disease. npj Parkinsons Dis. 2021; 7(1). DOI:10.1038/s41531-021-00257-9.

Jimenez Marin A, Rivera D, Boado V, Diez I, Labayen F, Garrido I, et al. Brain connectivity and cognitive functioning in individuals six months after multiorgan failure. Neuroimage Clin. 2020; 25: 102137-102137. DOI:10.1016/j.nicl.2019.102137.

Sánchez Puelles C, Calleja Felipe M, Ouro A, Bougamra G, Arroyo A, Diez I, et al. Corrigendum to: -PTEN activity defines an axis for plasticity at cortico-amygdala synapses and influences social behavior. Cereb Cortex. 2020; 30(2): 849-849. DOI:10.1093/cercor/bhz232.

Sevilla A, Morales MC, Ezkurra PA, Rasero J, Velasco V, Cancho Galan G, et al. BRAF V600E mutational load as a prognosis biomarker in malignant melanoma. PLoS One. 2020; 15(3): 230136-230136. DOI:10.1371/journal.pone.0230136.

He C, Chen H, Uddin LQ, Erramuzpe A, Bonifazi P, Guo X, et al. Structure-Function Connectomics Reveals Aberrant Developmental Trajectory Occurring at Preadolescence in the Autistic Brain. Cereb Cortex. 2020; 30(9): 5028-5037. DOI:10.1093/cercor/bhaa098.

Mosbacher Y, Khoyratee F, Goldin M, Kanner S, Malakai Y, Silva M, et al. Toward neuroprosthetic real-time communication from in silico to biological neuronal network via patterned optogenetic stimulation. Sci Rep. 2020; 10(1): 7512-7512. DOI:10.1038/s41598-020-63934-4.

Sanchez Puelles C, Calleja Felipe M, Ouro A, Bougamra G, Arroyo A, Diez I, et al. PTEN Activity Defines an Axis for Plasticity at Cortico-Amygdala Synapses and Influences Social Behavior. Cereb Cortex. 2020; 30(2): 505-524. DOI:10.1093/cercor/bhz103.

de las Heras J, Diez I, Jimenez Marin A, Cabrera A, Ramos Usuga D, Diaz Fernandez MV, et al. Brain Circuit Alterations and Cognitive Disability in Late-Onset Cobalamin D Disorder. J Clin Med. 2020; 9(4). DOI:10.3390/jcm9040990.

Rivera Gutierrez E, Ramirez Garcia JJ, Pavon Romero SH, Rodriguez MM, Ramirez Serrano A, Jimenez Marin A. Dicloxacillin Degradation with Free-Living Bacteria. Water Air Soil Pollut. 2020; 231(2). DOI:10.1007/s11270-020-4456-7.

Gianaros PJ, Kraynak TE, Kuan DC-H, Gross JJ, McRae K, Hariri AR, et al. Affective brain patterns as multivariate neural correlates of cardiovascular disease risk. SOC COGN AFFECT NEUR. 2020. DOI:10.1093/scan/nsaa050.

Mancuso F, Lage S, Rasero J, Diaz Ramon JL, Apraiz A, Perez Yarza G, et al. Serum markers improve current prediction of metastasis development in early-stage melanoma patients: a machine learning-based study. Mol Oncol. 2020; 14(8): 1705-1718. DOI:10.1002/1878-0261.12732.

Ellinghaus D, Degenhardt F, Bujanda L, Buti M, Albillos A, Invernizzi P, et al. Genomewide Association Study of Severe Covid-19 with Respiratory Failure. N Engl J Med. 2020; 383(16): 1522-1534. DOI:10.1056/NEJMoa2020283.

Labayru G, Jimenez Marin A, Fernandez E, Villanua J, Zulaica M, Cortes JM, et al. Neurodegeneration trajectory in pediatric and adult/late DM1: A follow-up MRI study across a decade. Ann Clin Transl Neurol. 2020; 7(10): 1802-1815. DOI:10.1002/acn3.51163.

Sierra Torre V, Plaza Zabala A, Bonifazi P, Abiega O, Diaz Aparicio I, Tegelberg S, et al. Microglial phagocytosis dysfunction in the dentate gyrus is related to local neuronal activity in a genetic model of epilepsy. Epilepsia. 2020. DOI:10.1111/epi.16692.

Del Pino R, Acera M, Murueta Goyena A, Lucas Jimenez O, Ojeda N, Ibarretxe Bilbao N, et al. The role of low contrast visual acuity in cognitive performance in Lewy body diseases. Mov Disord. 2020; 35: 155-156

Murueta Goyena A, del Pino R, Galdos M, Arana B, Acera M, Carmona Abellan M, et al. Retinal thickness predicts the risk of cognitive decline in Parkinson's disease. Ann Neurol. 2020; 89(1): 165-176. DOI:10.1002/ana.25944.

Gabilondo I, Llorens V, Rodriguez T, Fernandez M, Perez Concha T, Acera M, et al. Myocardial MIBG scintigraphy in genetic Parkinson's disease as a model for Lewy body disorders. Eur J Nucl Med Mol Imaging. 2019; 46(2): 376-384. DOI:10.1007/s00259-018-4183-0.

Lozovaya N, Nardou R, Tyzio R, Chiesa M, Pons Bennaceur A, Eftekhari S, et al. Early alterations in a mouse model of Rett syndrome: the GABA developmental shift is abolished at birth. Sci Rep. 2019; 9(1): 9276-9276. DOI:10.1038/s41598-019-45635-9.

Lasalvia M, Perna G, Manti L, Rasero J, Stramaglia S, Capozzi V. Raman spectroscopy monitoring of MCF10A cells irradiated by protons at clinical doses. INT J RADIAT BIOL. 2019; 95(2): 207-214. DOI:10.1080/09553002.2019.1547849.

Rasero J, Diez I, Cortes JM, Marinazzo D, Stramaglia S. Connectome sorting by consensus clustering increases separability in group neuroimaging studies. Netw Neurosci. 2019; 3(2): 325-343. DOI:10.1162/netn_a_00074.

Cloarec R, Riffault B, Dufour A, Rabiei H, Gouty Colomer L-, Dumon C, et al. Pyramidal neuron growth and increased hippocampal volume during labor and birth in autism. Sci Adv. 2019; 5(1). DOI:10.1126/sciadv.aav0394.

Esteban O, Markiewicz CJ, Blair RW, Moodie CA, Isik AI, Erramuzpe A, et al. fMRIPrep: a robust preprocessing pipeline for functional MRI. NAT METHODS. 2019; 16(1): 111-111. DOI:10.1038/s41592-018-0235-4.

Ospina JP, Jalilianhasanpour R, Williams B, Diez I, Perez DL. Individual Differences in Social Network Size Linked to Nucleus Accumbens and Hippocampal Volumes in Motor Functional Neurological Disorders. J NEUROPSYCH CLIN N. 2019; 31(3): 22-22

Murueta Goyena A, del Pino R, Reyero P, Galdos M, Arana B, Lucas Jimenez O, et al. Parafoveal thinning of inner retina is associated with visual dysfunction in Lewy body diseases. Mov Disord. 2019; 34(9): 1315-1324. DOI:10.1002/mds.27728.

De la Fuente IM, Bringas C, Malaina I, Regner B, Perez Samartin A, Dolores Boyano M, et al. The nucleus does not significantly affect the migratory trajectories of amoeba in two-dimensional environments. Sci Rep. 2019; 9(1): 16369-16369. DOI:10.1038/s41598-019-52716-2.

Nunes Xavier CE, Aurtenetxe O, Zaldumbide L, Lopez Almaraz R, Erramuzpe A, Cortes JM, et al. Protein tyrosine phosphatase PTPN1 modulates cell growth and associates with poor outcome in human neuroblastoma. Diagn Pathol. 2019; 14(1): 134-134. DOI:10.1186/s13000-019-0919-9.

Buccelli S, Bornat Y, Colombi I, Ambroise M, Martines L, Pasquale V, et al. A Neuromorphic Prosthesis to Restore Communication in Neuronal Networks. iScience. 2019; 19: 402-414. DOI:10.1016/j.isci.2019.07.046.

Kljajevic V, Erramuzpe A. Dorsal White Matter Integrity and Name Retrieval in Midlife. Curr Aging Sci. 2019; 12(1): 55-61. DOI:10.2174/1874609812666190614110214.

Beim Graben P, Jimenez Marin A, Diez I, Cortes JM, Desroches M, Rodrigues S. Metastable Resting State Brain Dynamics. Front Comput Neurosci. 2019; 13: 62-62. DOI:10.3389/fncom.2019.00062.

Fernandez A, Dumon C, Guimond D, Tyzio R, Bonifazi P, Lozovaya N, et al. The GABA Developmental Shift Is Abolished by Maternal Immune Activation Already at Birth. Cereb Cortex. 2019; 29(9): 3982-3992. DOI:10.1093/cercor/bhy279.

Erramuzpe A, Cortés JM, López JI. Multisite tumor sampling enhances the detection of intratumor heterogeneity at all different temporal stages of tumor evolution. Virchows Arch. 2018; 472(2): 187-194. DOI:10.1007/s00428-017-2223-y.

Kljajevic V, Erramuzpe A. Proper name retrieval and structural integrity of cerebral cortex in midlife: A cross-sectional study. Brain Cogn. 2018; 120: 26-33. DOI:10.1016/j.bandc.2017.11.003.

López JI, Pulido R, Cortés JM, Angulo JC, Lawrie CH. Potential impact of PD-L1 (SP-142) immunohistochemical heterogeneity in clear cell renal cell carcinoma immunotherapy. Pathol Res Pract. 2018; 214(8): 1110-1114. DOI:10.1016/j.prp.2018.06.003.

Aurtenetxe O, Zaldumbide L, Erramuzpe A, Lopez R, Lopez JI, Cortes JM, et al. DUSP5 expression associates with poor prognosis in human neuroblastoma. Exp Mol Pathol. 2018; 105(3): 272-278. DOI:10.1016/j.yexmp.2018.08.008.

Bonifazi P, Erramuzpe A, Diez I, Gabilondo I, Boisgontier MP, Pauwels L, et al. Structure-function multi-scale connectomics reveals a major role of the fronto-striato-thalamic circuit in brain aging. Hum Brain Mapp. 2018; 39(12): 4663-4677. DOI:10.1002/hbm.24312.

Rasero J, Aerts H, Ortega MO, Cortes JM, Stramaglia S, Marinazzo D. Predicting functional networks from region connectivity profiles in task-based versus resting-state fMRI data. PLoS One. 2018; 13(11). DOI:10.1371/journal.pone.0207385.

Luccioli S, Angulo Garcia D, Cossart R, Malvache A, Modol L, Sousa VH, et al. Modeling driver cells in developing neuronal networks. PLoS Comput Biol. 2018; 14(11). DOI:10.1371/journal.pcbi.1006551.

Camino Pontes B, Diez I, Jimenez Marin A, Rasero J, Erramuzpe A, Bonifazi P, et al. Interaction Information Along Lifespan of the Resting Brain Dynamics Reveals a Major Redundant Role of the Default Mode Network. Entropy (Basel). 2018; 20(10). DOI:10.3390/e20100742.

Larranaga A, Galdos M, Lucas O, Arana B, Acera M, Del Pino R, et al. The influence of visual pathway integrity on primary and higher order visual dysfunction in synucleinopathies. Invest Ophthalmol Vis Sci. 2018; 59(9)

Levi T, Bonifazi P, Massobrio P, Chiappalone M. Editorial: Closed-Loop Systems for Next-Generation Neuroprostheses. Front Neurosci. 2018; 12. DOI:10.3389/fnins.2018.00026.

Kanner S, Goldin M, Galron R, Ben Jacob E, Bonifazi P, Barzilai A. Astrocytes restore connectivity and synchronization in dysfunctional cerebellar networks. Proc Natl Acad Sci U S A. 2018; 115(31): 8025-8030. DOI:10.1073/pnas.1718582115.

Zaldumbide L, Aurtenetxe O, Erramuzpe A, Saiz M, Lopez Almaraz R, Caamano V, et al. Neuroblastoma PTPome Analysis Unveils Association of PTPN1 And DUSP5 Expression With Poor Prognosis. Mod Pathol. 2018; 31(2): 720-720

Zaldumbide L, Aurtenetxe O, Erramuzpe A, Saiz M, Lopez Almaraz R, Caamano V, et al. Neuroblastoma PTPome Analysis Unveils Association of PTPN1 And DUSP5 Expression With Poor Prognosis. Lab Invest. 2018; 98(1): 720-720

De la Fuente IM, Malaina I, Perez Samartin A, Dolores Boyano M, Perez Yarza G, Bringas C, et al. Dynamic properties of calcium-activated chloride currents in Xenopus laevis oocytes. Sci Rep. 2017; 7: 41791-41791. DOI:10.1038/srep41791.

Bovetti S, Moretti C, Zucca S, Dal Maschio M, Bonifazi P, Fellin T. Simultaneous high-speed imaging and optogenetic inhibition in the intact mouse brain. Sci Rep. 2017; 7: 40041-40041. DOI:10.1038/srep40041.

Gabilondo I, Rilo O, Ojeda N, Pena J, Gómez Gastiasoro A, Mendibe Bilbao M, et al. The influence of posterior visual pathway damage on visual information processing speed in multiple sclerosis. Mult Scler J. 2017; 23(9): 1276-1288. DOI:10.1177/1352458516676642.

López JI, Cortés JM. Multisite tumor sampling: a new tumor selection method to enhance intratumor heterogeneity detection. Hum Pathol. 2017; 64: 1-6. DOI:10.1016/j.humpath.2017.02.010.

Kroos JM, Marinelli I, Diez I, Cortes JM, Stramaglia S, Gerardo Giorda L. Patient-specific computational modeling of cortical spreading depression via diffusion tensor imaging. Int J Numer Meth Biomed. 2017; 33(11). DOI:10.1002/cnm.2874.

López JI, Erramuzpe A, Guarch R, Cortés JM, Pulido R, Llarena R, et al. CD34 immunostaining enhances a distinct pattern of intratumor angiogenesis with prognostic implications in clear cell renal cell carcinoma. APMIS. 2017; 125(2): 128-133. DOI:10.1111/apm.12649.

Luna S, Mingo J, Amo L, Rodriguez Escudero I, Erramuzpe A, Molina M, et al. Readthrough response of pathogenic premature termination codons at PTEN gene: implications in precision therapy for PHTS patients. Ann Oncol. 2017; 28(7)

Pulido R, Nunes Xavier C, Aurtenetxe O, Zaldumbide L, Erramuzpe A, Lopez R, et al. Neuroblastoma PTPome analysis unveils association of DUSP5 and PTPN1 expression with poor prognosis. Ann Oncol. 2017; 28(7)

Rasero J, Alonso Montes C, Diez I, Olabarrieta Landa L, Remaki L, Escudero I, et al. Group-Level Progressive Alterations in Brain Connectivity Patterns Revealed by Diffusion-Tensor Brain Networks across Severity Stages in Alzheimer's Disease. Front Aging Neurosci. 2017; 9: 215-215. DOI:10.3389/fnagi.2017.00215.

Ortiz Teran L, Diez I, Ortiz T, Perez DL, Aragon JI, Costumero V, et al. Brain circuit-gene expression relationships and neuroplasticity of multisensory cortices in blind children. Proc Natl Acad Sci U S A. 2017; 114(26): 6830-6835. DOI:10.1073/pnas.1619121114.

Stramaglia S, Pellicoro M, Angelini L, Amico E, Aerts H, Cortes JM, et al. Ising model with conserved magnetization on the human connectome: Implications on the relation structure-function in wakefulness and anesthesia. Chaos. 2017; 27(4). DOI:10.1063/1.4978999.

Cortes JM, de Petris G, Lopez JI. Detection of intratumor Heterogeneity in Modern Pathology: A Multisite tumor sampling Perspective. Front Med (Lausanne). 2017; 4: 25-25. DOI:10.3389/fmed.2017.00025.

Rasero J, Amoroso N, La Rocca M, Tangaro S, Bellotti R, Stramaglia S, et al. Multivariate regression analysis of structural MRI connectivity matrices in Alzheimer's disease. PLoS One. 2017; 12(11). DOI:10.1371/journal.pone.0187281.

Lissek T, Adams M, Adelman J, Ahissar E, Akaaboune M, Akil H, et al. Building Bridges through Science. Neuron. 2017; 96(4): 730-735. DOI:10.1016/j.neuron.2017.09.028.

Axpe IR, Velasco JA, Garcia JGB, Gallardo J, Goni BM. Hypomagnesemia: a Treatable Cause of Ataxia with Cerebellar Edema. Cerebellum. 2017; 16(5-6): 988-990. DOI:10.1007/s12311-017-0873-6.

Lopez JI, Errarte P, Erramuzpe A, Guarch R, Cortes JM, Angulo JC, et al. Fibroblast activation protein predicts prognosis in clear cell renal cell carcinoma. Hum Pathol. 2016; 54: 100-105. DOI:10.1016/j.humpath.2016.03.009.

Ortiz Teran L, Ortiz T, Perez DL, Ignacio Aragon J, Diez I, Pascual Leone A, et al. Brain Plasticity in Blind Subjects Centralizes Beyond the Modal Cortices. Front Syst Neurosci. 2016; 10: 61-61. DOI:10.3389/fnsys.2016.00061.

Ortega Martinez I, Gardeazabal J, Erramuzpe A, Sanchez Diez A, Cortes J, Garcia Vazquez MD, et al. Vitronectin and dermcidin serum levels predict the metastatic progression of AJCC I-II early-stage melanoma. Int J Cancer. 2016; 139(7): 1598-1607. DOI:10.1002/ijc.30202.

Mingo J, Erramuzpe A, Luna S, Aurtenetxe O, Amo L, Diez I, et al. One-Tube-Only Standardized Site-Directed Mutagenesis: An Alternative Approach to Generate Amino Acid Substitution Collections. PLoS One. 2016; 11(8). DOI:10.1371/journal.pone.0160972.

Zaldumbide L, Erramuzpe A, Guarch R, Pulido R, Cortes JM, Lopez JI. Snail heterogeneity in clear cell renal cell carcinoma. BMC Cancer. 2016; 16: 194-194. DOI:10.1186/s12885-016-2237-x.

Rodrigues S, Desroches M, Krupa M, Cortes JM, Sejnowski TJ, Ali AB. Time-coded neurotransmitter release at excitatory and inhibitory synapses. Proc Natl Acad Sci U S A. 2016; 113(8): 1108-1115. DOI:10.1073/pnas.1525591113.

Kroos JM, Diez I, Cortes JM, Stramaglia S, Gerardo Giorda L. Geometry Shapes Propagation:Assessing the Presence and Absence of Cortical Symmetries through a Computational Model of Cortical Spreading Depression. Front Comput Neurosci. 2016; 10: 6-6. DOI:10.3389/fncom.2016.00006.

Soloperto A, Bisio M, Palazzolo G, Chiappalone M, Bonifazi P, Difato F. Modulation of Neural Network Activity through Single Cell Ablation: An in Vitro Model of Minimally Invasive Neurosurgery. Molecules. 2016; 21(8). DOI:10.3390/molecules21081018.

Zarranz JJ, Fernandez Martinez M, Rodriguez O, Mateos B, Iglesias S, Baron J-C. Iowa APP mutation-related hereditary cerebral amyloid angiopathy (CAA): A new family from Spain. J Neurol Sci. 2016; 363: 55-56. DOI:10.1016/j.jns.2016.02.029.

Guarch R, Cortés JM, Lawrie CH, López JI. Multi-site tumor sampling (MSTS) improves the performance of histological detection of intratumor heterogeneity in clear cell renal cell carcinoma (CCRCC). F1000Res. 2016; 5: 2020-2020. DOI:10.12688/f1000research.9419.2.

Lopez JI, Cortes JM. A multi-site cutting device implements efficiently the divide-and-conquer strategy in tumor sampling. F1000Res. 2016; 5: 1587-1587. DOI:10.12688/f1000research.9091.2.

Lopez JI, Cortes JM. A divide-and-conquer strategy in tumor sampling enhances detection of intratumor heterogeneity in routine pathology: A modeling approach in clear cell renal cell carcinoma. F1000Res. 2016; 5: 385-385. DOI:10.12688/f1000research.8196.2.

Stramaglia S, Angelini L, Wu G, Cortes JM, Faes L, Marinazzo D. Synergetic and Redundant Information Flow Detected by Unnormalized Granger Causality: Application to Resting State fMRI. IEEE Trans Biomed Eng. 2016; 63(12): 2518-2524. DOI:10.1109/TBME.2016.2559578.

Zaldumbide L, Erramuzpe A, Guarch R, Cortés JM, López JI. Large (> 3.8 cm) clear cell renal cell carcinomas are morphologically and immunohistochemically heterogeneous. Virchows Arch. 2015; 466(1): 61-66. DOI:10.1007/s00428-014-1673-8.

Diez I, Bonifazi P, Escudero I, Mateos B, Munoz MA, Stramaglia S, et al. A novel brain partition highlights the modular skeleton shared by structure and function. Sci Rep. 2015; 5: 10532-10532. DOI:10.1038/srep10532.

Erramuzpe A, Encinas JM, Sierra A, Maletic Savatic M, Brewster AL, Anderson AE, et al. Longitudinal variations of brain functional connectivity: A case report study based on a mouse model of epilepsy. F1000Res. 2015; 4: 144-144. DOI:10.12688/f1000research.6570.1.

Diez I, Erramuzpe A, Escudero I, Mateos B, Cabrera A, Marinazzo D, et al. Information Flow Between Resting-State Networks. Brain Connect. 2015; 5(9): 554-564. DOI:10.1089/brain.2014.0337.

Amor TA, Russo R, Diez I, Bharath P, Zirovich M, Stramaglia S, et al. Extreme brain events: Higher-order statistics of brain resting activity and its relation with structural connectivity. EPL. 2015; 111(6). DOI:10.1209/0295-5075/111/68007.

Alonso Montes C, Diez I, Remaki L, Escudero I, Mateos B, Rosseel Y, et al. Lagged and instantaneous dynamical influences related to brain structural connectivity. Front Psychol. 2015; 6. DOI:10.3389/fpsyg.2015.01024.

Gabilondo I, Rilo O, Ojeda N, Pena J, Gomez A, Mendibe M, et al. Visual information processing speed and the damage to posterior visual pathway in multiple sclerosis. Mult Scler J. 2015; 21(11): 50-50

Galbarriatu L, Pomposo I, Aurrecoechea J, Marinas A, Agundez M, Gomez JC, et al. Vagus nerve stimulation therapy for treatment-resistant epilepsy: A 15-year experience at a single institution. Clin Neurol Neurosurg. 2015; 137: 89-93. DOI:10.1016/j.clineuro.2015.06.023.

Stramaglia S, Angelini L, Cortes JM, Marinazzo D. Synergy, redundancy and unnormalized Granger causality. Conf Proc Ieee Eng Med Biol Soc. 2015: 4037-4040. DOI:10.1109/EMBC.2015.7319280.

Erramuzpe A, Ortega GJ, Pastor J, de Sola RG, Marinazzo D, Stramaglia S, et al. Identification of redundant and synergetic circuits in triplets of electrophysiological data. J Neural Eng. 2015; 12(6). DOI:10.1088/1741-2560/12/6/066007.

Barzilai A, Kanner S, Goldin M, Galron R, Hanein Y, Jacob EB, et al. The role of astrocyte alterations in early changes in the dynamics of cultured cerebellar networks. Glia. 2015; 63(1): 53-53

CORTES DIAZ JM. Information transfer of an Ising model on a brain network. BMC Neurosci. 2014. DOI:10.1186/1471-2202-14-S1-P376.

CORTES DIAZ JM, DIEZ PALACIO I. Disruption of transfer entropy and inter-hemispheric brain functional connectivity in patients with disorder of consciousness. BMC Neurosci. 2014. DOI:10.1186/1471-2202-14-S1-P83.

Marinazzo D, Pellicoro M, Wu G, Angelini L, Cortes JM, Stramaglia S. Information Transfer and Criticality in the Ising Model on the Human Connectome. PLoS One. 2014; 9(4). DOI:10.1371/journal.pone.0093616.

De la Fuente IM, Cortés JM, Valero E, Desroches M, Rodrigues S, Malaina I, et al. On the Dynamics of the Adenylate Energy System: Homeorhesis vs Homeostasis. PLoS One. 2014; 9(10). DOI:10.1371/journal.pone.0108676.

Cortes JM, Marinazzo D, Munoz MA. Editorial for the research topic: information-based methods for neuroimaging: analyzing structure, function and dynamics. Front Neuroinformatics. 2014; 8. DOI:10.3389/fninf.2014.00086.

Stramaglia S, Cortes JM, Marinazzo D. Synergy and redundancy in the Granger causal analysis of dynamical networks. New J Phys. 2014; 16. DOI:10.1088/1367-2630/16/10/105003.

Corominas Cishek A, Guarch R, Erramuzpe A, Zaldumbide L, Cerda N, Andueza E, et al. Parameters predicting intratumor heterogeneity in clear cell renal cell carcinoma. Virchows Arch. 2014; 465(1): 158-158

Cerda N, Corominas Cishek A, Caamano V, Gonzalez M, Andueza E, Altamirano J, et al. Neurocytomas: related to oligodendroglioma?. Virchows Arch. 2014; 465(1): 259-259

Cortes JM, Desroches M, Rodrigues S, Veltz R, Munoz MA, Sejnowski TJ. Short-term synaptic plasticity in the deterministic Tsodyks-Markram model leads to unpredictable network dynamics. Proc Natl Acad Sci U.S.A. 2013;110:16610-5. FI: 9,737(Q1)

Gorostiza Laborda D, Mateos Goñi B, Berástegui Imaz M, Escudero Martínez I, Iturre Salinas B. Diffuse brain involvement in paediatrics: magnetic resonance findings. Radiologia. 2013;55:253-60. FI: 0,000(Q0)

De la Fuente IM, Cortes JM, Pelta DA, Veguillas J. Attractor Metabolic Networks. PLoS One. 2013;8:e58284.FI: 3,730(Q1).

Mäki-Marttunen V, Diez I, Cortes JM, Chialvo DR, Villarreal M. Disruption of transfer entropy and inter-hemispheric brain functional connectivity in patients with disorder of consciousness. Front Neuroinform. 2013;7:24.

 

Tesis del grupo

Autor/a: Antonio Jiménez Marín. Título: Neurogenetics and brain connectomics: insights from healthy individuals, monogenic and polygenic disorders. Directores/as: Jesús M. Cortés Díaz.

Autor/a: Diana Vidal De Francisco. Título: Planificación Familiar en hombres y mujeres con Esclerosis Múltiple. Análisis del Registro Andaluz de Embarazos en pacientes con Esclerosis Múltiple (RAEEM). Directores/as: Mar Mendibe Bilbao, Alfredo Rodriguez Antigüedad Zarrantz.

Autor/a: Marilyn Gatica Briceño. Título: "Advances of high-order interactions in the human brain: Applications in aging and neurodegeneration". Directores/as: Dr. Patricio Orio, Dr. Jesús M. Cortés. URI: https://addi.ehu.es/handle/10810/58354

Autor/a: Asier Erramuzpe Aliaga. Título: "Development of new methods in Biomedical Engineering for brain connectivity biomarkers in epilepsy and other pathological conditions". Director/a: Dr. Jesús Mª Cortés Díaz.

Autor/a: Ibai Diez Palacio. Título: New neuroimaging methods for clinical neuroscience and neurological disorders. Director/a: Dr. Jesús María Cortés Díaz. UPV/EHU

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